Location: Pig whole-body with embedded organs using automatic workflow for inserting the organs @ 34e8653a2f43 / organinserter workflow / Argon_Viewer_1-backup-document.json

Author:
elias-soltani <egha355@aucklanduni.ac.nz>
Date:
2022-02-25 12:42:46+13:00
Desc:
Initial upload
Permanent Source URI:
https://models.fieldml.org/workspace/82f/rawfile/34e8653a2f430dc6276d137ff39c6f4786b12737/organinserter workflow/Argon_Viewer_1-backup-document.json

{
  "Materials": {
    "DefaultMaterial": "default",
    "DefaultSelectedMaterial": "default_selected",
    "DefaultSurfaceMaterial": "white",
    "Materials": [
      {
        "Alpha": 1,
        "Ambient": [
          0,
          0,
          0
        ],
        "Diffuse": [
          0,
          0,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "black",
        "Shininess": 0.2,
        "Specular": [
          0.3,
          0.3,
          0.3
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0,
          0,
          1
        ],
        "Diffuse": [
          0,
          0,
          1
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "blue",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.7,
          0.7,
          0.6
        ],
        "Diffuse": [
          0.9,
          0.9,
          0.7
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "bone",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.5,
          0.25,
          0
        ],
        "Diffuse": [
          0.5,
          0.25,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "brown",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0,
          1,
          1
        ],
        "Diffuse": [
          0,
          1,
          1
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "cyan",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0,
          0,
          0
        ],
        "Diffuse": [
          0,
          0,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "default",
        "Shininess": 0,
        "Specular": [
          0,
          0,
          0
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          1,
          0.2,
          0
        ],
        "Diffuse": [
          1,
          0.2,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "default_selected",
        "Shininess": 0,
        "Specular": [
          0,
          0,
          0
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          1,
          0.4,
          0
        ],
        "Diffuse": [
          1,
          0.7,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "gold",
        "Shininess": 0.3,
        "Specular": [
          0.5,
          0.5,
          0.5
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0,
          1,
          0
        ],
        "Diffuse": [
          0,
          1,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "green",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.25,
          0.25,
          0.25
        ],
        "Diffuse": [
          0.25,
          0.25,
          0.25
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "grey25",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.5,
          0.5,
          0.5
        ],
        "Diffuse": [
          0.5,
          0.5,
          0.5
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "grey50",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.75,
          0.75,
          0.75
        ],
        "Diffuse": [
          0.75,
          0.75,
          0.75
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "grey75",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          1,
          0,
          1
        ],
        "Diffuse": [
          1,
          0,
          1
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "magenta",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.4,
          0.14,
          0.11
        ],
        "Diffuse": [
          0.5,
          0.12,
          0.1
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "muscle",
        "Shininess": 0.2,
        "Specular": [
          0.3,
          0.5,
          0.5
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          1,
          0.5,
          0
        ],
        "Diffuse": [
          1,
          0.5,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "orange",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          1,
          0,
          0
        ],
        "Diffuse": [
          1,
          0,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "red",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.4,
          0.4,
          0.4
        ],
        "Diffuse": [
          0.7,
          0.7,
          0.7
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "silver",
        "Shininess": 0.3,
        "Specular": [
          0.5,
          0.5,
          0.5
        ]
      },
      {
        "Alpha": 0.73,
        "Ambient": [
          1,
          0.6666666666666666,
          0
        ],
        "Diffuse": [
          0.8509803921568627,
          0.5647058823529412,
          0.4235294117647059
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "tanslucent_yellow",
        "Shininess": 0.59,
        "Specular": [
          0.1333333333333333,
          0.1333333333333333,
          0.1333333333333333
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.9,
          0.7,
          0.5
        ],
        "Diffuse": [
          0.9,
          0.7,
          0.5
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "tissue",
        "Shininess": 0.2000000029802322,
        "Specular": [
          0.2,
          0.2,
          0.3
        ]
      },
      {
        "Alpha": 0.4,
        "Ambient": [
          1,
          0.6666666666666666,
          0
        ],
        "Diffuse": [
          1,
          0.6666666666666666,
          0.4980392156862745
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "translucent_orange",
        "Shininess": 0,
        "Specular": [
          0.02745098039215686,
          0.02745098039215686,
          0.02745098039215686
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          1,
          0.3333333333333333,
          0
        ],
        "Diffuse": [
          1,
          0.3333333333333333,
          0.4980392156862745
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "trasnlucent_red",
        "Shininess": 0,
        "Specular": [
          0,
          0,
          0
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          1,
          1,
          1
        ],
        "Diffuse": [
          1,
          1,
          1
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "white",
        "Shininess": 0,
        "Specular": [
          0,
          0,
          0
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          1,
          1,
          0
        ],
        "Diffuse": [
          1,
          1,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "yellow",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      }
    ]
  },
  "OpenCMISS-Argon Version": [
    "0",
    "2",
    "4"
  ],
  "RootRegion": {
    "ChildRegions": [
      {
        "Fieldmodule": {
          "Fields": [
            {
              "CoordinateSystemType": "RECTANGULAR_CARTESIAN",
              "FieldFiniteElement": {
                "ComponentNames": [
                  "x",
                  "y",
                  "z"
                ],
                "NumberOfComponents": 3
              },
              "IsManaged": true,
              "IsTypeCoordinate": true,
              "Name": "fitted coordinates"
            }
          ]
        },
        "Model": {
          "Sources": [
            {
              "FileName": "C:\\Users\\egha355\\Desktop\\sparc3\\codes\\mapclient_workflows\\organinserter\\lung_transformed_fit1.exf",
              "RegionName": "/lung",
              "Type": "FILE"
            }
          ]
        },
        "Name": "lung",
        "Scene": {
          "Graphics": [
            {
              "BoundaryMode": "BOUNDARY",
              "CoordinateField": "fitted coordinates",
              "ElementFaceType": "ALL",
              "FieldDomainType": "MESH2D",
              "Material": "brown",
              "RenderLineWidth": 1,
              "RenderPointSize": 1,
              "RenderPolygonMode": "SHADED",
              "Scenecoordinatesystem": "LOCAL",
              "SelectMode": "ON",
              "SelectedMaterial": "default_selected",
              "SubgroupField": "lung",
              "Surfaces": {},
              "Tessellation": "default",
              "Type": "SURFACES",
              "VisibilityFlag": true
            }
          ],
          "VisibilityFlag": true
        }
      },
      {
        "Fieldmodule": {
          "Fields": [
            {
              "CoordinateSystemType": "RECTANGULAR_CARTESIAN",
              "FieldFiniteElement": {
                "ComponentNames": [
                  "x",
                  "y",
                  "z"
                ],
                "NumberOfComponents": 3
              },
              "IsManaged": true,
              "IsTypeCoordinate": true,
              "Name": "fitted coordinates"
            }
          ]
        },
        "Model": {
          "Sources": [
            {
              "FileName": "C:\\Users\\egha355\\Desktop\\sparc3\\codes\\mapclient_workflows\\organinserter\\heart_transformed_fit1.exf",
              "RegionName": "/heart",
              "Type": "FILE"
            }
          ]
        },
        "Name": "heart",
        "Scene": {
          "Graphics": [
            {
              "BoundaryMode": "BOUNDARY",
              "CoordinateField": "fitted coordinates",
              "ElementFaceType": "ALL",
              "FieldDomainType": "MESH2D",
              "Material": "red",
              "RenderLineWidth": 1,
              "RenderPointSize": 1,
              "RenderPolygonMode": "SHADED",
              "Scenecoordinatesystem": "LOCAL",
              "SelectMode": "ON",
              "SelectedMaterial": "default_selected",
              "SubgroupField": "heart",
              "Surfaces": {},
              "Tessellation": "default",
              "Type": "SURFACES",
              "VisibilityFlag": true
            },
            {
              "BoundaryMode": "ALL",
              "CoordinateField": "fitted coordinates",
              "ElementFaceType": "ALL",
              "FieldDomainType": "MESH1D",
              "LineAttributes": {
                "BaseSize": [
                  1,
                  1
                ],
                "ScaleFactors": [
                  1,
                  1
                ],
                "ShapeType": "LINE"
              },
              "Lines": {},
              "Material": "default",
              "RenderLineWidth": 1,
              "RenderPointSize": 1,
              "RenderPolygonMode": "SHADED",
              "Scenecoordinatesystem": "LOCAL",
              "SelectMode": "ON",
              "SelectedMaterial": "default_selected",
              "SubgroupField": "heart",
              "Tessellation": "default",
              "Type": "LINES",
              "VisibilityFlag": true
            }
          ],
          "VisibilityFlag": true
        }
      }
    ],
    "Fieldmodule": {
      "Fields": [
        {
          "FieldStoredMeshLocation": {
            "Mesh": "mesh3d"
          },
          "IsManaged": true,
          "Name": "body_marker_location"
        },
        {
          "FieldStoredString": null,
          "IsManaged": true,
          "Name": "body_marker_name"
        },
        {
          "CoordinateSystemType": "RECTANGULAR_CARTESIAN",
          "FieldFiniteElement": {
            "ComponentNames": [
              "x",
              "y",
              "z"
            ],
            "NumberOfComponents": 3
          },
          "IsManaged": true,
          "IsTypeCoordinate": true,
          "Name": "coordinates"
        },
        {
          "FieldStoredMeshLocation": {
            "Mesh": "mesh3d"
          },
          "IsManaged": true,
          "Name": "marker_location"
        },
        {
          "FieldStoredString": null,
          "IsManaged": true,
          "Name": "marker_name"
        }
      ]
    },
    "Model": {
      "Sources": [
        {
          "FileName": "C:\\Users\\egha355\\Desktop\\work_related\\pig\\embedorgans\\whole-body3.exf",
          "RegionName": "/",
          "Type": "FILE"
        }
      ]
    },
    "Scene": {
      "Graphics": [
        {
          "BoundaryMode": "ALL",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH1D",
          "LineAttributes": {
            "BaseSize": [
              0,
              0
            ],
            "ScaleFactors": [
              1,
              1
            ],
            "ShapeType": "LINE"
          },
          "Lines": {},
          "Material": "grey50",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "skin epidermis",
          "Tessellation": "default",
          "Type": "LINES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "ALL",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH1D",
          "LineAttributes": {
            "BaseSize": [
              10,
              10
            ],
            "ScaleFactors": [
              1,
              1
            ],
            "ShapeType": "CIRCLE_EXTRUSION"
          },
          "Lines": {},
          "Material": "grey75",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "spinal cord",
          "Tessellation": "default",
          "Type": "LINES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "ALL",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH2D",
          "Material": "muscle",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "diaphragm",
          "Surfaces": {},
          "Tessellation": "default",
          "Type": "SURFACES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "ALL",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH2D",
          "Material": "translucent_orange",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "skin epidermis",
          "Surfaces": {},
          "Tessellation": "default",
          "Type": "SURFACES",
          "VisibilityFlag": true
        }
      ],
      "VisibilityFlag": true
    }
  },
  "Sceneviewer": {
    "AntialiasSampling": 0,
    "BackgroundColourRGB": [
      1.0,
      1.0,
      1.0
    ],
    "EyePosition": [
      -2761.909486891857,
      761.7588245726809,
      892.1084517157087
    ],
    "FarClippingPlane": 18073.513955754697,
    "LightingLocalViewer": false,
    "LightingTwoSided": true,
    "LookatPosition": [
      18.916181794373788,
      -84.3773976674792,
      906.9486076369712
    ],
    "NearClippingPlane": 2036.2495553210972,
    "PerturbLinesFlag": true,
    "ProjectionMode": "PERSPECTIVE",
    "Scene": "/",
    "Scenefilter": "default",
    "TranslationRate": 1,
    "TransparencyLayers": 1,
    "TransparencyMode": "SLOW",
    "TumbleRate": 1.5,
    "UpVector": [
      0.29098083652504964,
      0.9565920002829872,
      0.016183255845964643
    ],
    "ViewAngle": 0.6981317007972521,
    "ZoomRate": 1
  },
  "Spectrums": {
    "DefaultSpectrum": "default",
    "Spectrums": [
      {
        "Components": [
          {
            "Active": true,
            "BandedRatio": 0.2,
            "ColourMappingType": "RAINBOW",
            "ColourMaximum": 0,
            "ColourMinimum": 1,
            "ColourReverse": false,
            "Exaggeration": 1,
            "ExtendAbove": true,
            "ExtendBelow": true,
            "FieldComponent": 1,
            "FixMaximum": false,
            "FixMinimum": false,
            "NumberOfBands": 10,
            "RangeMaximum": 1,
            "RangeMinimum": 0,
            "ScaleType": "LINEAR",
            "StepValue": 0.5
          }
        ],
        "MaterialOverwrite": true,
        "Name": "default"
      }
    ]
  },
  "Tessellations": {
    "DefaultPointsTessellation": "default_points",
    "DefaultTessellation": "default",
    "Tessellations": [
      {
        "CircleDivisions": 12,
        "MinimumDivisions": [
          1
        ],
        "Name": "default",
        "RefinementFactors": [
          6
        ]
      },
      {
        "CircleDivisions": 12,
        "MinimumDivisions": [
          1
        ],
        "Name": "default_points",
        "RefinementFactors": [
          6
        ]
      },
      {
        "CircleDivisions": 12,
        "MinimumDivisions": [
          1
        ],
        "Name": "material_preview",
        "RefinementFactors": [
          1
        ]
      },
      {
        "CircleDivisions": 12,
        "MinimumDivisions": [
          1
        ],
        "Name": "tessellation1",
        "RefinementFactors": [
          2
        ]
      }
    ]
  }
}